Installation

Before installing SECE, please ensure that the software dependencies are installed. The software and versions we use are

scanpy==1.9.1
pytorch==1.4.0
torch-geometric==2.0.4
torch-cluster==1.5.4
torch-scatter==2.0.3
torch-sparse==0.6.1
torch-spline-conv==1.2.0
torchvision==0.5.0

SECE can be downloaded via pip:

pip install SECE

Then SECE can be used in python:

import SECE

Downloading SECE code from https://github.com/yuyuanyuana/SECE